• Tae Yoon Park, Mark D.M. Leiserson, Gunnar W. Klau, Benjamin J. Raphael. Integrating genetic dependencies and genomic alterations across pathways and cancer types. bioRxiv. 2020.07.13.184697; doi:, July 2020
  • Sven Schrinner, Manish Goel, Michael Wulfert, Philipp Spohr, Korbinian Schneeberger and Gunnar W. Klau. The Longest Run Subsequence Problem. To appear in Proc. WABI 2020.
  • Maren BrandNguyen Khoa Tran, Philipp Spohr, Sven Schrinner, and Gunnar W. Klau. The Homo-Edit Distance Problem. bioRxiv. 2020.05.27.118273; doi:, May 2020
  • Martin Papenberg and Gunnar W. Klau. Using anticlustering to partition data sets into equivalent parts. Psychological Methods. Advance online publication., 2020
  • Sven Schrinner, Rebecca Serra Mari, Jana Ebler, Mikko Rautiainen, Lancelot Seillier, Julia Reimer, Björn Usadel, Tobias Marschall, Gunnar W. Klau. Haplotype Threading: Accurate Polyploid Phasing from Long Reads. bioRxiv. February 2020:2020.02.04.933523. doi:10.1101/2020.02.04.933523.
  • Gunnar W. KlauThe lost recipes from the Four Schools of Amathus. Extended abstract. In Proc. SOFSEM 2020: Theory and Practice of Computer Science, LNCS 12011, Springer, 2020


  • Martin Papenberg and Gunnar W. KlauUsing anticlustering to partition a stimulus pool into equivalent parts. Preprint on PsyArXiv. doi:10.31234/ Submitted for publication. October 30, 2019
  • Martin S. Engler, Bertrand Caron, Lourens Veen, Daan Geerke, Alan Mark, Gunnar W. Klau. Automated partial atomic charge assignment for drug-like molecules: a fast knapsack approach. To appear in Algorithms for Molecular Biology. BMC Springer Nature, 2019.


  • Martin S. Engler, Bertrand Caron, Lourens Veen, Daan Geerke, Alan Mark, Gunnar W. Klau. Multiple-choice knapsack for assigning partial atomic charges in drug-like molecules. In Proc. WABI 2018, pp. 16:1-16:13, vol. 113 of Leibniz International Proceedings in Informatics (LIPIcs), doi 10.4230/LIPIcs.WABI.2018.16, 2018
  • Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir. eXamine: Visualizing annotated networks in Cytoscape. Software tool article in F1000Research 2018, 7:519 (doi: 10.12688/f1000research.14612.1) 
  • Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Ben Raphael. Phylogenetic Copy-Number Factorization of Multiple Tumor Samples. Journal of Computational Biology,, 2018


  • Filipe Branco dos Santos, Brett G. Olivier, Joost Boele, Vincent Smessaert, Philippe De Rop, Petra Krumpochova, Gunnar W. Klau, Martin Giera, Philippe Dehottay, Bas Teusink,  Philippe Goffin. Probing the genome-scale metabolic landscape of Bordetella pertussis, the causative agent of whooping cough. Appl. Environ. Microbiol. doi:10.1128/AEM.01528-17, accepted, 2017
  • Martin S. Engler, Mohammed El-Kebir, Jelmer Mulder, Alan E. Mark, Daan P. Geerke, Gunnar W. Klau. Enumerating common molecular substructures. In Proc. German Bioinformatics Conference (GCB 2017). PeerJ Preprints 5:e3250v1
  • Gunnar W. Klau, Tobias Marschall. A Guided Tour to Computational Haplotyping. In Proc. of CiE 2017 (Computability in Europe). LNCS 10307, pp. 50-63, Springer, 2017.
  • Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Ben J. Raphael. The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data. In: Sahinalp S. (eds) Research in Computational Molecular Biology. RECOMB 2017. LNCS 10229. Springer, 2017
  • Martin S. Engler, Kerstin Scheubert, Ulrich S. Schubert and Sebastian Böcker: Exploring the Limits of the Geometric Copolymerization Model. Polymers, 9:101, 2017.



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