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Abgeschlossene Arbeiten

2024

  • "An exact approach for train cargo scheduling", Bachelorarbeit, Ammon Sillah
  • "Visualization Tool for the Geographical Distribution and Genetic Similarity of SARS-CoV-2 in Germany", Bachelorarbeit, Leon Theis
  • "Evaluating algorithms for the alignment of brain connectome networks", Bachelorarbeit, Johannes Herchen
  • "Establishing an Analysis Framework for Evaluating Live-Cell Image-Based Drug Screening Data", Masterarbeit, My Ky Huynh

2023

  • "Implementing a Biclustering Integer Linear Program and Application to Genomic Data", Bachelorarbeit, Markus Siemko
  • "A Comparison of the Wavefront Algorithm and its Predecessors", Bachelorarbeit, Philippe Kreiß
  • "An Investigation into Algorithmic Complexity as a Measure of Randomness", Bachelorarbeit, Tim Angelike
  • "Vergleich von Datenstrukturen zum Ausdünnen von Punktmengen", Bachelorarbeit, Piet Leyendecker
  • "Evaluating a normalized maximum common subgraph metric for the comparison of molecular structures", Bachelorarbeit, Henning Mitzinger
  • "Design and Application of Graph Sampling Sets", Masterarbeit, Christopher Orlowicz
  • "Finding k-common fragments in molecular graphs using integer linear programming", Masterarbeit, Jonas Lauer
  • "Predicting complications and survival time in patients with myelodysplastic syndromes using time-series based machine learning", Masterarbeit, Jonathan Bobak
  • "Solving the train cargo routing problem with fixed scheduled lines using integer linear programming", Bachelorarbeit, Ammon Sillah
  • "Maximizing dispersion for anticlustering", Bachelorarbeit, Max Diekhoff
  • "Skin Cancer Classification Using Transfer Learning", Bachelorarbeit, Manuel Michels
  • "Enrichment Analysis of Differentially Expressed microRNAs: An Application to Pancreatic Neoplasms", Masterarbeit, Sarah Schweier

2022

  • "Feature extraction for machine learning of chronic pain using in-homogeneous time-series data from wearables", Masterarbeit Molekulare Medizin, Jonas Kupschus
  • "Predicting Clinical Outcome after Aneurysmal Subarachnoid Hemorrhage", Masterarbeit, Alberto Descalzo Garcia
  • "Converting Truth Tables to Minimized Boolean Functions", Bachelorarbeit, Toni Nguyen
  • "A Combinatorial Approach to MHC Class I and II Peptide Vaccine Design with Application to SARS-CoV-2", Masterarbeit, Sara Schulte
  • "Correlation between Staphylococcal protein A types and geographic location", Bachelorarbeit, Nina Romanow
  • "Feature Selection using Random Forest and Bootstrap Sampling on Cancer Drug Screening Data", Bachelorarbeit, Anahita Gorgipour
  • "Developing an Interactive Visualization Tool for Pangenome Graphs", Masterarbeit, Yulian Martynovsky
  • "An ILP Implementation for Predicting Drug Sensitivity in Cancer Cell Lines", Bachelorarbeit, Tomas Raising
  • "Anomaly Detection in Current-Voltage Curves: A Data-Driven Approach", Bachelorarbeit, Carolin Winkels
  • "Linearization of Genome Sequence Graphs using Integer Linear Programming", Bachelorarbeit, Christopher Schmitz
  • "Optimisation problems for the reinforcement of telecommunication networks", Masterarbeit, Adrian Dominic Prinz
  • "Solving Systematic Conservation Planning using Integer Linear Programming", Bachelorarbeit, Simon Schreinermacher
  • "A Framework for General Purpose Solvers with an Application to Cluster Editing", Masterarbeit, Jan Höckesfeld
  • "Vorhersagen von Komplikationen nach einer Subarachnoidalblutung anhand von Machine Learning Methoden", Bachelorarbeit, Viktoria Maria Blombach
  • "Small-RNA sequencing analysis pipeline in Snakemake and comparison to Nextflow", Bachelorarbeit, Florian Radziej
  • "Reproduktion und Erweiterung einer Evaluierungspipeline für Algorithmen zur Identifikation aktiver Module", Bachelorarbeit, Chiara Julia Berry
  • "Identifying functional k-mers in genome sequences.", Bachelorarbeit, Vincent Wilantara
  • "Ähnlichkeitssuche chemischer Elemente mit dem Maximum-Common-Substructure-Verfahren", Bachelorarbeit, Luca Krahn
  • "A combinatorial approach for reconstructing rDNA repeats", Masterarbeit, Frederik Oehl
  • "Solving Connected Dominating Set Variants Using SAT", Barchelorarbeit, Anas El Methari
  • "Polynomial-time solvable special cases of anticlustering", Bachelorarbeit, Joshua Kokol
  • "Cancer Type Classification Using a Logic Formulation", Bachelorarbeit, Hendrik Schmitt
  • "Entwicklung eines Artificial Neural Network zur Erkennung der Wirksamkeit von Krebsmedikamenten", Bachelorarbeit, Torben Schmitz

2021

  • "Einzelzell-RNA-Sequenzierungsanalyse mittels Scanpy – Ein Vergleich von Snakemake Workflows", Bachelorarbeit, Florian Mai
  • "Entwicklung einer webbasierten Anwendung zur interaktiven Analyse klinischer Daten", Bachelorarbeit, Rebecca Fröhlich
  • "Fast Maximum Common Edge Subgraph Computation for Comparing Similar Molecular Structures", Masterarbeit, Jan Seipp
  • "A Comparison of Two Single-Cell RNA-Sequencing Analysis Pipelines using Snakemake", Bachelorarbeit, Pascal Meinhard
  • "Aligning Optical Mapping Data to Genome Graphs", Masterarbeit, Laura Kühle
  • "Konstruktion eines Planungsmodells für Aussaatzeiten unter Unsicherheit des tatsächlichen Erntezeitpunkts", Bachelorarbeit, Jan van Grimbergen
  • "Solving Connected Dominating Set Variants Using Constraint Programming", Bachelorarbeit, Tim Pfalz
  • "Snakemake as a workflow engine for reciprocal BLAST analyses", Bachelorarbeit, Lukas Becker
  • "Logic models to classify cancer types based on tumor DNA samples", Masterarbeit, Nguyen Khoa Tran

2020

  • "Aggregieren von gerichteten azyklischen Graphen unter Verwendung von ganzzahliger linearer Programmierung", Bachelorarbeit, Max Oerter
  • "Using anticlustering to maximize diversity and dispersion: Comparing exact and heuristic approaches", Bachelorarbeit, Martin Breuer
  • "Solving Connected Dominating Set Variants Using Integer Linear Programming", Bachelorarbeit, Mario Surlemont
  • "Klassifizierung von Krebsarten durch Tumor-DNA mittels Support-Vektor-Maschinen und künstlichen neuronalen Netzen" Bachelorarbeit, Roman Jumatov
  • "Developing a Cytoscape app to solve k-cluster-editing using fast heuristics", Bachelorarbeit, Lukas Ettel
  • "k-mer Based Typing of Methicillin-Resistant Staphylococcus Aureus", Masterarbeit, Philipp Spohr
  • "Developing a Snakemake Workflow for Gene Set Enrichment Analysis", Bachelorarbeit, Lars Meinke
  • "A user-friendly Snakemake pipeline for differential expression analysis", Bachelorarbeit, Julian Kremer
  • "Solving the maximum allele co-occurrence problem for single individual haplotype phasing with Integer Linear Programming", Bachelorarbeit, Sarah Schweier
  • "Automated Immunophenotyping of Multi-Experimental Flow Cytometry Data", Masterarbeit, Manuel Lentzen
  • "Computing a Maximum Common Edge Subgraph of Two Molecular Graphs", Bachelorarbeit, Adrian Prinz
  • "Das-Homo-Edit-Distanz-Problem", Bachelorarbeit, Maren Brand
  • "Detection of somatic mutations and loss-of-heterozygosity events in a cohort of Glioblastoma patients", Bachelorarbeit, Sara Chantal Schulte
  • "Applying trio phasing to identify germline de novo mutations in children with cancer", Bachelorarbeit, Frederik Oehl
  • "Solving Dominating Set Using Answer Set Programming" Bachelorarbeit, My Ky Huynh
  • "Evaluating different methods for aircraft boarding" Bachelorarbeit, Hao Tian
  • "On a String Partitioning Problem" Bachelorarbeit, Michael Wulfert
  • "Contig-Assembly der MHC-Region mittels kräftebasierter Verfahren", Bachelorarbeit, Jan Höckesfeld

2019

  • "Contig-Assembly der MHC-Region mittels Linearer Programmierung", Bachelorarbeit, Marvin Lindemann
  • "Learning partial charges", Masterarbeit, Jakob Schlegel
  • "Vorhersage von Methicillin-resistenten Staphylococcus-aureus-Typen mittels Deep Learning", Bachelorarbeit, Andre Walter
  • "Assignment of partial charges to identical atom neighborhoods of drug-like molecules", Bachelorarbeit, Richard Michael Geller
  • "Solving the Maximum Weight Connected Subgraph Problem using Color Coding", Masterarbeit (VU Amsterdam), Eline van Mantgem
  • "Lagrangian Relaxation for the Generalized Robinson-Foulds Metric", Bachelorarbeit, Laura Christine Kühle
  • "Network analysis of heart infarction mice transcriptomes", Bachelorarbeit, Caroline Jachmann

2018

  • "Bestimmung des HLA-Genotyps auf Basis von genomweiter Sequenzierung und k-mer-Häufigkeiten", Bachelorarbeit, Yulian Martynovsky
  • "Creating similar item sets using integer linear programming with an application to questionnaire design in experimental psychology", Bachelorarbeit, Martin Papenberg
  • "Cluster Editing mit ganzzahliger linearer Programmierung: eine Open-Source-Lösung",
    Bachelorarbeit, Martin Klümpen
  • "Identifying significant targets of molecular fragments", Bachelorarbeit, Jonas Weber,
  • "Enrichment-Analyse viral deregulierter Signalmodule in Glioblastom-Zelllinien", Bachelorarbeit, Jonas König
  • "Das Maximum-Weight Connected Subgraph Problem auf Bäumen", Bachelorarbeit, Jan Seipp
  • "Visualisation of atom groups in molecuar graphs", Bachelorarbeit, Gareth Bilaney
  • "Pipeline zur Identifizierung funktionaler Module auf Basis von Onkoproteomikdaten", Bachelorarbeit, Anne Abraham
  • "Identifying functional modules in Arabidopsis thaliana root development", Bachelorarbeit, Felix Grünewald

2017

  • "Developing and evaluating a Cytoscape app for graph-based clustering", Bachelorarbeit, Philipp Spohr
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