Abgeschlossene Arbeiten
2026
| Bsc | Lisa Tran | Discovering Subgroups of aSAH Patients Using Time Series Clustering |
| MSc | Daniel Wiens | Prediction of mechanical properties from tensile tests in cold rolled advanced high strength stee |
| BSc QBio | Sara Kreci | Quantifying Mitochondrial Connectivity from Electron Microscopy Images Using AI-Based Segmentation |
| BSc | Daniel Thurau | Skin Cancer Classification using Data-efficient Image Transformer |
| Bsc | David Buczynski | Evaluating the Feasible and Infeasible Region Search Algorithm for Anticlustering |
| BSc | Max Mertens | Assembly bakterieller Genome mit dem hierarchischen Overlap-Graphen |
2025
| BSc | Johann Hagen Thormeyer | Benchmarking Cell Type Prediction Methods for High-Plex Imaging Data |
| MSc | Vinicius Sfredo Sokal Lima | Multivariable optimization in non-woven fiber structures |
| BSc | Federico Nellen | Variable Valenzen in der chemischen Strukturgenerierung |
| BSc | Lisa Becker | Exploring Patient Outcomes in aSAH Using Unsupervised Machine Learning |
| BSc (QBio) | Lolita Toma Antoon | ClonoQuest: A Computational Pipeline for Analysis of Diversity and Clonality in B-cell and T-cell Receptor Repertoires |
| BSc (QBio) | Sezin Dogan | Cross-Cancer Profiling of an Allergy-Linked Immune Signature Using Publicly Available Multi-Omics and Prognostic Data |
| BSc | Alexander Bergmann | Zellcluster-Analyse anhand von Live-Cell-Imaging-Daten |
| MSc | Felix Bartels | DENCert - A density based approach to evaluating certainty of model outputs |
| MSc | Maximilian Massing | Generalized Species Counterpoint: A Constraint Programming Approach to Rule-Based Composition |
| BSc | Julian Schnabel | deepKEA: Site-Specific Kinase Enrichment for Phosphoproteomic Data |
| MSc | Matthias Hoffjan | Cell State Classification Using Neural Networks on Live-Cell Imaging Data |
| BSc | Johanna Klaas | Evaluating algorithms and objective functions for anticlustering |
| BSc | Yijie Yao | Clusteranalyse von Tumor-Bäumen mit der Generalized Robinson-Foulds Metrik und Vergleich mit OncoTree2Vec |
| BSc | Simon Kerkmann | From Data to Discovery: A Causal Discovery Pipeline for Biological Research |
| BSc | Dennis Oliver Grzeschik | Analyse der SCOPe40 Proteindatenbank mithilfe der "myopic MCES"-Distanz |
| BSc | Fabian Raphael Riering | Segmentation Quality Assessment: Analyzing the Performance of the Felzenszwalb and Huttenlocher Graph-Based Algorithm |
| MSc (Biology) | Loukas Limistiras | Exploring Silent Germline Mutations with Trio Whole-Exome Sequencing Data |
| BSc | Lukas Bock | Evaluating vector representations learned for common trajectory identification |
2024
- Extraction of structured data from medical records, Bachelorarbeit, Peter Carl Nicolas Gerlach
- Anwendung zur Interaktiven Visualisierung von Cophosphorylierungsnetzwerken, Bachelorarbeit, Patrick Manuel Weinkauf
- Evaluierung einer Flussheuristik für Steinernetzwerke, Bachelorarbeit, Lucy Annabel Lukosch
- Identifying potential autophagy related biomarkers in diseases, Bachelorarbeit, Ann-Katrin Queisser
- Anticlustering in R: An Efficient Constraint Programming Implementation, Bachelorarbeit, Nils Lüschow
- Optimierung des Dose-Time-Response-Modells für Live-Cell Imaging Daten, Bachelorarbeit, Christian Berschauer
- Greedy Algorithmen zur Platzierung von Ladestationen, Bachelorarbeit, Carl Constantin Wermann
- Evaluating the three-phase search approach with dynamic population size for anticlustering, Bachelorarbeit, Hannah Hengelbrock
- Logic-based Regression for Cancer Drug Response Prediction, Bachelorarbeit, Alexa Eckstein
- Predicting Mortality Following Allogeneic Haematopoietic Stem Cell Transplantation Using Tree-based Classifiers, Masterarbeit, Rebecca Cristina Fröhlich
- Featureless Prediction of Unconventional Protein Secretion, Masterarbeit, Jan van Grimbergen
- A visualization of anticlustering as an app for Cytoscape, Bachelorarbeit, Tobias Pfeiffer
- Implementation and Evaluation of Imputation Methods for Handling Missing Values in Clinical Time Series Data, Bachelorarbeit, Lucas Wefers
- Ein graphentheoretischer Ansatz zur Optimierung von Epitop-basierten Impfstoffen mittels Hierarchical Overlap Graphs, Bachelorarbeit, Lennart Horney
- An exact approach for train cargo scheduling, Bachelorarbeit, Ammon Sillah
- Visualization Tool for the Geographical Distribution and Genetic Similarity of SARS-CoV-2 in Germany, Bachelorarbeit, Leon Theis
- Evaluating algorithms for the alignment of brain connectome networks, Bachelorarbeit, Johannes Herchen
- Establishing an Analysis Framework for Evaluating Live-Cell Image-Based Drug Screening Data, Masterarbeit, My Ky Huynh
- Anticlustering unter Maximierung der Dispersion mit Constraint-Programmierung, Bachelorarbeit, Lars Schwabe
2023
- Implementing a Biclustering Integer Linear Program and Application to Genomic Data, Bachelorarbeit, Markus Siemko
- A Comparison of the Wavefront Algorithm and its Predecessors, Bachelorarbeit, Philippe Kreiß
- An Investigation into Algorithmic Complexity as a Measure of Randomness, Bachelorarbeit, Tim Angelike
- Vergleich von Datenstrukturen zum Ausdünnen von Punktmengen, Bachelorarbeit, Piet Leyendecker
- Evaluating a normalized maximum common subgraph metric for the comparison of molecular structures, Bachelorarbeit, Henning Mitzinger
- Design and Application of Graph Sampling Sets, Masterarbeit im Studiengang AI and Data Science, Christopher Orlowicz
- Finding k-common fragments in molecular graphs using integer linear programming, Masterarbeit, Jonas Lauer
- Predicting complications and survival time in patients with myelodysplastic syndromes using time-series based machine learning, Masterarbeit, Jonathan Bobak
- Solving the train cargo routing problem with fixed scheduled lines using integer linear programming, Bachelorarbeit, Ammon Sillah
- Maximizing dispersion for anticlustering, Bachelorarbeit, Max Diekhoff
- Skin Cancer Classification Using Transfer Learning, Bachelorarbeit, Manuel Michels
- Enrichment Analysis of Differentially Expressed microRNAs: An Application to Pancreatic Neoplasms, Masterarbeit, Sarah Schweier
- Feature Selection mit Artificial Neural Networks für Krebsmedikament-Screening-Daten, Bachelorarbeit, Marvin Gooßens
2022
- Feature extraction for machine learning of chronic pain using in-homogeneous time-series data from wearables, Masterarbeit im, Studiengang Molekulare Medizin, Jonas Kupschus
- Predicting Clinical Outcome after Aneurysmal Subarachnoid Hemorrhage, Masterarbeit, Alberto Descalzo Garcia
- Converting Truth Tables to Minimized Boolean Functions, Bachelorarbeit, Toni Nguyen
- A Combinatorial Approach to MHC Class I and II Peptide Vaccine Design with Application to SARS-CoV-2, Masterarbeit, Sara Schulte
- Correlation between Staphylococcal protein A types and geographic location, Bachelorarbeit, Nina Romanow
- Feature Selection using Random Forest and Bootstrap Sampling on Cancer Drug Screening Data, Bachelorarbeit, Anahita Gorgipour
- Developing an Interactive Visualization Tool for Pangenome Graphs, Masterarbeit, Yulian Martynovsky
- An ILP Implementation for Predicting Drug Sensitivity in Cancer Cell Lines, Bachelorarbeit, Tomas Raising
- Anomaly Detection in Current-Voltage Curves: A Data-Driven Approach, Bachelorarbeit, Carolin Winkels
- Linearization of Genome Sequence Graphs using Integer Linear Programming, Bachelorarbeit, Christopher Schmitz
- Optimisation problems for the reinforcement of telecommunication networks, Masterarbeit, Adrian Dominic Prinz
- Solving Systematic Conservation Planning using Integer Linear Programming, Bachelorarbeit, Simon Schreinermacher
- A Framework for General Purpose Solvers with an Application to Cluster Editing, Masterarbeit, Jan Höckesfeld
- Vorhersagen von Komplikationen nach einer Subarachnoidalblutung anhand von Machine Learning Methoden, Bachelorarbeit, Viktoria Maria Blombach
- Small-RNA sequencing analysis pipeline in Snakemake and comparison to Nextflow, Bachelorarbeit, Florian Radziej
- Reproduktion und Erweiterung einer Evaluierungspipeline für Algorithmen zur Identifikation aktiver Module, Bachelorarbeit, Chiara Julia Berry
- Identifying functional k-mers in genome sequences. Bachelorarbeit, Vincent Wilantara
- Ähnlichkeitssuche chemischer Elemente mit dem Maximum-Common-Substructure-Verfahren, Bachelorarbeit, Luca Krahn
- Ein Vergleich von zwei Pipelines zur Messung der Veränderung von mRNA-Abundanz aus Einzelzell-RNA-Sequenzierungsdaten, Bachelorarbeit im Studiengang Interdisziplinäre Naturwissenschaften, Jerrit Endom
- A combinatorial approach for reconstructing rDNA repeats, Masterarbeit, Frederik Oehl
- Solving Connected Dominating Set Variants Using SAT, Barchelorarbeit, Anas El Methari
- Polynomial-time solvable special cases of anticlustering, Bachelorarbeit, Joshua Kokol
- Cancer Type Classification Using a Logic Formulation, Bachelorarbeit, Hendrik Schmitt
- Entwicklung eines Artificial Neural Network zur Erkennung der Wirksamkeit von Krebsmedikamenten, Bachelorarbeit, Torben Schmitz
- Skiplisten für Punktaggregation im Datenstrom, Bachelorarbeit, Norman Bunk
2021
- Einzelzell-RNA-Sequenzierungsanalyse mittels Scanpy – Ein Vergleich von Snakemake Workflows, Bachelorarbeit, Florian Mai
- Entwicklung einer webbasierten Anwendung zur interaktiven Analyse klinischer Daten, Bachelorarbeit, Rebecca Fröhlich
- Fast Maximum Common Edge Subgraph Computation for Comparing Similar Molecular Structures, Masterarbeit, Jan Seipp
- A Comparison of Two Single-Cell RNA-Sequencing Analysis Pipelines using Snakemake, Bachelorarbeit, Pascal Meinhard
- Aligning Optical Mapping Data to Genome Graphs, Masterarbeit, Laura Kühle
- Konstruktion eines Planungsmodells für Aussaatzeiten unter Unsicherheit des tatsächlichen Erntezeitpunkts, Bachelorarbeit, Jan van Grimbergen
- Solving Connected Dominating Set Variants Using Constraint Programming, Bachelorarbeit, Tim Pfalz
- Snakemake as a workflow engine for reciprocal BLAST analyses, Bachelorarbeit, Lukas Becker
- Logic models to classify cancer types based on tumor DNA samples, Masterarbeit, Nguyen Khoa Tran
2020
- Aggregieren von gerichteten azyklischen Graphen unter Verwendung von ganzzahliger linearer Programmierung, Bachelorarbeit, Max Oerter
- Using anticlustering to maximize diversity and dispersion: Comparing exact and heuristic approaches, Bachelorarbeit, Martin Breuer
- Solving Connected Dominating Set Variants Using Integer Linear Programming, Bachelorarbeit, Mario Surlemont
- Klassifizierung von Krebsarten durch Tumor-DNA mittels Support-Vektor-Maschinen und künstlichen neuronalen Netzen Bachelorarbeit, Roman Jumatov
- Developing a Cytoscape app to solve k-cluster-editing using fast heuristics, Bachelorarbeit, Lukas Ettel
- k-mer Based Typing of Methicillin-Resistant Staphylococcus Aureus, Masterarbeit, Philipp Spohr
- Developing a Snakemake Workflow for Gene Set Enrichment Analysis, Bachelorarbeit, Lars Meinke
- A user-friendly Snakemake pipeline for differential expression analysis, Bachelorarbeit, Julian Kremer
- Solving the maximum allele co-occurrence problem for single individual haplotype phasing with Integer Linear Programming, Bachelorarbeit, Sarah Schweier
- Automated Immunophenotyping of Multi-Experimental Flow Cytometry Data, Masterarbeit, Manuel Lentzen
- Computing a Maximum Common Edge Subgraph of Two Molecular Graphs, Bachelorarbeit, Adrian Prinz
- Das-Homo-Edit-Distanz-Problem, Bachelorarbeit, Maren Brand
- Detection of somatic mutations and loss-of-heterozygosity events in a cohort of Glioblastoma patients, Bachelorarbeit, Sara Chantal Schulte
- Applying trio phasing to identify germline de novo mutations in children with cancer, Bachelorarbeit, Frederik Oehl
- Solving Dominating Set Using Answer Set Programming. Bachelorarbeit, My Ky Huynh
- Evaluating different methods for aircraft boarding. Bachelorarbeit, Hao Tian
- On a String Partitioning Problem. Bachelorarbeit, Michael Wulfert
- Contig-Assembly der MHC-Region mittels kräftebasierter Verfahren, Bachelorarbeit, Jan Höckesfeld
2019
- Contig-Assembly der MHC-Region mittels Linearer Programmierung, Bachelorarbeit, Marvin Lindemann
- Learning partial charges, Masterarbeit, Jakob Schlegel
- Vorhersage von Methicillin-resistenten Staphylococcus-aureus-Typen mittels Deep Learning, Bachelorarbeit, Andre Walter
- Assignment of partial charges to identical atom neighborhoods of drug-like molecules, Bachelorarbeit, Richard Michael Geller
- Solving the Maximum Weight Connected Subgraph Problem using Color Coding, Masterarbeit (VU Amsterdam), Eline van Mantgem
- Lagrangian Relaxation for the Generalized Robinson-Foulds Metric, Bachelorarbeit, Laura Christine Kühle
- Network analysis of heart infarction mice transcriptomes, Bachelorarbeit, Caroline Jachmann
2018
- Bestimmung des HLA-Genotyps auf Basis von genomweiter Sequenzierung und k-mer-Häufigkeiten, Bachelorarbeit, Yulian Martynovsky
- Creating similar item sets using integer linear programming with an application to questionnaire design in experimental psychology, Bachelorarbeit, Martin Papenberg
- Cluster Editing mit ganzzahliger linearer Programmierung: eine Open-Source-Lösung,
Bachelorarbeit, Martin Klümpen - Identifying significant targets of molecular fragments, Bachelorarbeit, Jonas Weber,
- Enrichment-Analyse viral deregulierter Signalmodule in Glioblastom-Zelllinien, Bachelorarbeit, Jonas König
- Das Maximum-Weight Connected Subgraph Problem auf Bäumen, Bachelorarbeit, Jan Seipp
- Visualisation of atom groups in molecuar graphs, Bachelorarbeit, Gareth Bilaney
- Pipeline zur Identifizierung funktionaler Module auf Basis von Onkoproteomikdaten, Bachelorarbeit, Anne Abraham
- Identifying functional modules in Arabidopsis thaliana root development, Bachelorarbeit, Felix Grünewald
2017
- Developing and evaluating a Cytoscape app for graph-based clustering, Bachelorarbeit, Philipp Spohr