"An Investigation into Algorithmic Complexity as a Measure of Randomness", Bachelorarbeit, Tim Angelike
"Evaluating a normalized maximum common subgraph metric for the comparison of molecular structures", Bachelorarbeit, Henning Mitzinger
"Design and Application of Graph Sampling Sets", Masterarbeit, Christopher Orlowicz
"Finding k-common fragments in molecular graphs using integer linear programming", Masterarbeit, Jonas Lauer
"Predicting complications and survival time in patients with myelodysplastic syndromes using time-series based machine learning", Masterarbeit, Jonathan Bobak
"Solving the train cargo routing problem with fixed scheduled lines using integer linear programming", Bachelorarbeit, Ammon Sillah
"Maximizing dispersion for anticlustering", Bachelorarbeit, Max Diekhoff
"Skin Cancer Classification Using Transfer Learning", Bachelorarbeit, Manuel Michels
"Enrichment Analysis of Differentially Expressed microRNAs: An Application to Pancreatic Neoplasms", Masterarbeit, Sarah Schweier
2022
"Feature extraction for machine learning of chronic pain using in-homogeneous time-series data from wearables", Masterarbeit Molekulare Medizin, Jonas Kupschus
"Predicting Clinical Outcome after Aneurysmal Subarachnoid Hemorrhage", Masterarbeit, Alberto Descalzo Garcia
"Converting Truth Tables to Minimized Boolean Functions", Bachelorarbeit, Toni Nguyen
"A Combinatorial Approach to MHC Class I and II Peptide Vaccine Design with Application to SARS-CoV-2", Masterarbeit, Sara Schulte
"Correlation between Staphylococcal protein A types and geographic location", Bachelorarbeit, Nina Romanow
"Feature Selection using Random Forest and Bootstrap Sampling on Cancer Drug Screening Data", Bachelorarbeit, Anahita Gorgipour
"Developing an Interactive Visualization Tool for Pangenome Graphs", Masterarbeit, Yulian Martynovsky
"An ILP Implementation for Predicting Drug Sensitivity in Cancer Cell Lines", Bachelorarbeit, Tomas Raising
"Anomaly Detection in Current-Voltage Curves: A Data-Driven Approach", Bachelorarbeit, Carolin Winkels
"Linearization of Genome Sequence Graphs using Integer Linear Programming", Bachelorarbeit, Christopher Schmitz
"Optimisation problems for the reinforcement of telecommunication networks", Masterarbeit, Adrian Dominic Prinz
"Solving Systematic Conservation Planning using Integer Linear Programming", Bachelorarbeit, Simon Schreinermacher
"A Framework for General Purpose Solvers with an Application to Cluster Editing", Masterarbeit, Jan Höckesfeld
"Vorhersagen von Komplikationen nach einer Subarachnoidalblutung anhand von Machine Learning Methoden", Bachelorarbeit, Viktoria Maria Blombach
"Small-RNA sequencing analysis pipeline in Snakemake and comparison to Nextflow", Bachelorarbeit, Florian Radziej
"Reproduktion und Erweiterung einer Evaluierungspipeline für Algorithmen zur Identifikation aktiver Module", Bachelorarbeit, Chiara Julia Berry
"Identifying functional k-mers in genome sequences.", Bachelorarbeit, Vincent Wilantara
"Ähnlichkeitssuche chemischer Elemente mit dem Maximum-Common-Substructure-Verfahren", Bachelorarbeit, Luca Krahn
"A combinatorial approach for reconstructing rDNA repeats", Masterarbeit, Frederik Oehl
"Solving Connected Dominating Set Variants Using SAT", Barchelorarbeit, Anas El Methari
"Polynomial-time solvable special cases of anticlustering", Bachelorarbeit, Joshua Kokol
"Cancer Type Classification Using a Logic Formulation", Bachelorarbeit, Hendrik Schmitt
"Entwicklung eines Artificial Neural Network zur Erkennung der Wirksamkeit von Krebsmedikamenten", Bachelorarbeit, Torben Schmitz
2021
"Einzelzell-RNA-Sequenzierungsanalyse mittels Scanpy – Ein Vergleich von Snakemake Workflows", Bachelorarbeit, Florian Mai
"Entwicklung einer webbasierten Anwendung zur interaktiven Analyse klinischer Daten", Bachelorarbeit, Rebecca Fröhlich
"Fast Maximum Common Edge Subgraph Computation for Comparing Similar Molecular Structures", Masterarbeit, Jan Seipp
"A Comparison of Two Single-Cell RNA-Sequencing Analysis Pipelines using Snakemake", Bachelorarbeit, Pascal Meinhard
"Aligning Optical Mapping Data to Genome Graphs", Masterarbeit, Laura Kühle
"Konstruktion eines Planungsmodells für Aussaatzeiten unter Unsicherheit des tatsächlichen Erntezeitpunkts", Bachelorarbeit, Jan van Grimbergen
"Solving Connected Dominating Set Variants Using Constraint Programming", Bachelorarbeit, Tim Pfalz
"Snakemake as a workflow engine for reciprocal BLAST analyses", Bachelorarbeit, Lukas Becker
"Logic models to classify cancer types based on tumor DNA samples", Masterarbeit, Nguyen Khoa Tran
2020
"Aggregieren von gerichteten azyklischen Graphen unter Verwendung von ganzzahliger linearer Programmierung", Bachelorarbeit, Max Oerter
"Using anticlustering to maximize diversity and dispersion: Comparing exact and heuristic approaches", Bachelorarbeit, Martin Breuer
"Solving Connected Dominating Set Variants Using Integer Linear Programming", Bachelorarbeit, Mario Surlemont
"Klassifizierung von Krebsarten durch Tumor-DNA mittels Support-Vektor-Maschinen und künstlichen neuronalen Netzen" Bachelorarbeit, Roman Jumatov
"Developing a Cytoscape app to solve k-cluster-editing using fast heuristics", Bachelorarbeit, Lukas Ettel
"k-mer Based Typing of Methicillin-Resistant Staphylococcus Aureus", Masterarbeit, Philipp Spohr
"Developing a Snakemake Workflow for Gene Set Enrichment Analysis", Bachelorarbeit, Lars Meinke
"A user-friendly Snakemake pipeline for differential expression analysis", Bachelorarbeit, Julian Kremer
"Solving the maximum allele co-occurrence problem for single individual haplotype phasing with Integer Linear Programming", Bachelorarbeit, Sarah Schweier
"Automated Immunophenotyping of Multi-Experimental Flow Cytometry Data", Masterarbeit, Manuel Lentzen
"Computing a Maximum Common Edge Subgraph of Two Molecular Graphs", Bachelorarbeit, Adrian Prinz
"Detection of somatic mutations and loss-of-heterozygosity events in a cohort of Glioblastoma patients", Bachelorarbeit, Sara Chantal Schulte
"Applying trio phasing to identify germline de novo mutations in children with cancer", Bachelorarbeit, Frederik Oehl
"Solving Dominating Set Using Answer Set Programming" Bachelorarbeit, My Ky Huynh
"Evaluating different methods for aircraft boarding" Bachelorarbeit, Hao Tian
"On a String Partitioning Problem" Bachelorarbeit, Michael Wulfert
"Contig-Assembly der MHC-Region mittels kräftebasierter Verfahren", Bachelorarbeit, Jan Höckesfeld
2019
"Contig-Assembly der MHC-Region mittels Linearer Programmierung", Bachelorarbeit, Marvin Lindemann
"Learning partial charges", Masterarbeit, Jakob Schlegel
"Vorhersage von Methicillin-resistenten Staphylococcus-aureus-Typen mittels Deep Learning", Bachelorarbeit, Andre Walter
"Assignment of partial charges to identical atom neighborhoods of drug-like molecules", Bachelorarbeit, Richard Michael Geller
"Solving the Maximum Weight Connected Subgraph Problem using Color Coding", Masterarbeit (VU Amsterdam), Eline van Mantgem
"Lagrangian Relaxation for the Generalized Robinson-Foulds Metric", Bachelorarbeit, Laura Christine Kühle
"Network analysis of heart infarction mice transcriptomes", Bachelorarbeit, Caroline Jachmann
2018
"Bestimmung des HLA-Genotyps auf Basis von genomweiter Sequenzierung und k-mer-Häufigkeiten", Bachelorarbeit, Yulian Martynovsky
"Creating similar item sets using integer linear programming with an application to questionnaire design in experimental psychology", Bachelorarbeit, Martin Papenberg
"Cluster Editing mit ganzzahliger linearer Programmierung: eine Open-Source-Lösung", Bachelorarbeit, Martin Klümpen
"Identifying significant targets of molecular fragments", Bachelorarbeit, Jonas Weber,
"Enrichment-Analyse viral deregulierter Signalmodule in Glioblastom-Zelllinien", Bachelorarbeit, Jonas König
"Das Maximum-Weight Connected Subgraph Problem auf Bäumen", Bachelorarbeit, Jan Seipp
"Visualisation of atom groups in molecuar graphs", Bachelorarbeit, Gareth Bilaney
"Pipeline zur Identifizierung funktionaler Module auf Basis von Onkoproteomikdaten", Bachelorarbeit, Anne Abraham
"Identifying functional modules in Arabidopsis thaliana root development", Bachelorarbeit, Felix Grünewald
2017
"Developing and evaluating a Cytoscape app for graph-based clustering", Bachelorarbeit, Philipp Spohr
